Funnel ABF and Funnel Metadynamics #302
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Add the funnel Metadynamics and Funnel ABF along with the restraint function
Add the funnel collective variable
Add the loggers for the funnel methods
add funnel_cv in the list of collective variables
Add funnel examples
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Merging to
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Activate cv restraints
Make restrains functional on every range of cv_max
Add perpendicular projection as CV
Reduce number of functions in funnel function
Correct restraint bias shape.
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Implementation of Funnel Metadynamics (https://doi.org/10.1073/pnas.1303186110) and the Funnel ABF version following the ABF implementation of PMFLib - A Toolkit for Free Energy Calculations (https://pmflib.ncbr.muni.cz/).